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DATA COMMONS USER MANUAL
Maintenance Notice 23 Oct 2018

CyVerse systems will be unavailable on Tuesday, October 23rd, from 7:00am to 5:00pm MST.
Check your local timezone here https://goo.gl/iLJg6R

Keep up to date with our maintenance schedules on the CyVerse public calendar
http://www.cyverse.org/maintenance-calendar

ACCESS TO OR USAGE OF THE FOLLOWING SERVICES WILL BE UNAVAILABLE OR DISRUPTED:

Discovery Environment:        7:00am to 5:00pm MST

The Discovery Environment will be unavailable while patches and updates are applied.
        ** Currently running analyses will be terminated. Please plan accordingly.

DataS
tore                    
7:00am to 5:00pm MST
The DataStore will be unavailable during the maintenance period.

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Atmosphere instances will be operational; however, you will not be able to use the Data Store within your instance.

User Portal                   7:00am to 5:00pm MST
The User Portal, http://user.cyverse.org, will be unavailable while we perform maintenance and updates.

Agave/Science API             7:00am to 5:00pm MST

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  1. Following the normal procedure, upon creation of the DOI, the dataset will move to the Community Data > commons_repo > curated folder in the DE and be visible at datacommons.cyverse.org/commons_repo/curated.
  2. Within one dayan hour, the curator will remove public permission from this dataset and make give you the owner.
  3. You may share the dataset with collaborators by giving them read permission.
  4. NOTE: It is very important that:
    1. You don't give anyone else write or own permission, or they can change the dataset.
    2. You don't make any changes to the dataset yourself!
  5. The curator will also read permission. If you need to authorize others to read the dataset, please notify the curator by sending CyVerse user names of your collaborators or reviewers.
  6. The curator will retain ownership permission of the data, in case any changes are needed. 
Note
titleNOTE

The DOI indicates that the dataset is stable, so it must not change. If you need to make

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corrections or changes to the metadata, please ask the curator at doi@cyverse.org to do so. This is important, because the metadata must be updated in multiple locations.

If you need to make changes to the dataset, but don't feel a new version is warrented, please email doi@cyverse.org.

Step 9:

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 For Versioned Reserved DOI only: Edit the original dataset and create new versions

  1. Follow this step only if you plan to make changes to the original dataset and release a new version.
  2. When collaborators suggest changes to the dataset, make the changes in the original copy in your private data directory.

 

Step 10: Publish your final dataset

  1. Aft

 

  1. When you want to release a new stable version of the dataset, follow the steps above. Be sure to include version numbers in the metadata.
  2. The curator will add links among different versions of the dataset.
Tip
titleTIP

You should release a new stable version of the dataset any time changes will be cited in a presentation or publication. The author should cite the DOI of the dataset that includes their changes.

Step 10A: For Versioned Reserved DOI only: Publish your final dataset

  1. When no more changes are needed to the dataset and it is ready for public release, follow the steps on Requesting a Permanent Identifier in the Data Commons for the final dataset.
  2. Be sure to include the appropriate version number in the metadata.
  3. Upon publication, the curator will:
    • Create a DOI for the final dataset and make it public.
    • Verify that all versions of the dataset are properly linked.
    • Make all older versions of the dataset public.

Step 10B: For Embargoed Reserved DOI only: Publish your final dataset

  1. Contact the curator at doi@cyverse.org to ask for the embargo to be removed from your dataset.
  2. Upon publication, the curator will make the dataset public. It will then be visible to anyone at http://datacommons.cyverse.org/ or to any logged in CyVerse users on the Discovery environment.