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  • Transfer data to Cyverse Discovery Environment
  • Gunzip your files
  • FastQC
  • Hisat2 (index and align)
  • HTSeq Count
  • DeSeq2


titleExample Data

Example data to be used with this tutorial can be found here: Community Data -> iplantcollaborative -> example_data -> Mouse_RNAseq_DESeq2


How to Transfer your files to Cyverse Discovery Environment (DE)