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LEARNING MATERIALS
Maintenance Notification

CyVerse systems will be unavailable on Tuesday, September 18th, from 7:00am to 5:00pm MST.
Check your local timezone here https://goo.gl/CHqLph

Keep up to date with our maintenance schedules on the CyVerse public calendar
http://www.cyverse.org/maintenance-calendar

ACCESS TO OR USAGE OF THE FOLLOWING SERVICES WILL BE UNAVAILABLE OR DISRUPTED:

Discovery Environment:        7:00am to 5:00pm MST

The Discovery Environment will be unavailable while patches and updates are applied.
        ** Currently running analyses will be terminated. Please plan accordingly.

DataStore                    
7:00am to 5:00pm MST
The DataStore will be unavailable during the maintenance period.

Atmosphere                    7:00am to 5:00pm MST
Atmosphere instances will continue to run.
Commonly-used images will be available for launching instances, but users will be unable to create new images, or launch instances from rarely-used images, while we perform Atmosphere and DataStore maintenance.

User Portal                   7:00am to 5:00pm MST
The User Portal, http://user.cyverse.org, will be unavailable while we perform maintenance and updates.

Agave/Science API             7:00am to 5:00pm MST
The Agave/Science API will be unavailable during this maintenance period.


Please contact suppport@cyverse.org for any questions, or concerns.

 

 

 

 

 

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  • Transfer data to Cyverse Discovery Environment
  • Gunzip your files
  • FastQC
  • Hisat2 (index and align)
  • HTSeq Count
  • DeSeq2


 

Info
titleExample Data

Example data to be used with this tutorial can be found here: Community Data -> iplantcollaborative -> example_data -> Mouse_RNAseq_DESeq2

 

How to Transfer your files to Cyverse Discovery Environment (DE)

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