The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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The 'sra_id_list.txt' file contains a list of 15 SRA id's, one SRA ID per line

 

Code Block
SRR3403881
SRR5227388
SRR5227389
SRR5227390
SRR5227391
SRR5227392
SRR5227393
SRR5227394
SRR5227395
SRR5227396
SRR5227397
SRR5227398
SRR5227399
SRR5227400
SRR5227401
  1. Inputs
    1. Input File: /iplant/home/shared/iplantcollaborative/example_data/OSG-RMTA/sra_id_list.txt
    2. Number of lines per file: 5
    3. File_prefix: OSGosg_RMTArmta_
  2. Outputs
    1. Output folder: OSG_RMTA_Output OSG-RMTA-File-Split

After a successful run, you'll get 3 files each containing 5 SRA Id's with the prefix OSGosg_RMTA in OSGrmta_ RMTA_Output in OSG-RMTA-File-Split folder