The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Scrappie

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Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group.

Quick Start

Test Data

Test data for this app are temporarily not available in the Discovery Environment.

Input File(s)

Fast5 read file(s) or directory containing the reads is required.

Output File(s)

Scrappie will natively provide fasta or sam file, but this version will provide fastq.

Tool Source for App

https://github.com/nanoporetech/scrappie