The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Please run Infernal app with the test data located at Community Data > iplantcollaborative > example_data > Infernal  fastq-sample  (/iplant/home/shared/iplantcollaborative/example_data/Infernalfastq-sample)

  1. Inputs:

    1. Input fastq files: test.fastq

  2. Settings:
    1. The number of reads to sample: 50 (Default is 10000)
    2. The proportion of the total reads to sample: Leave this empty

    3. Sample with replacement (Default is Sample without replacement): Leave this unchecked
  3. Outputs:
    1. Output file prefix: (Default is 'sample'): Leave this empty