GMAP is a tool for rapidly and accurately mapping and aligning cDNA sequences to genomic sequences.
- Inputs (mandatory):
- Genome directory: Path to the directory that was built using gmap_build-2018-03-25
- Genome database: Name of the genome database (This should match the genome name of the Genome name in the gmap_build-2018-03-25 app)
- Transcript fasta file: Path to the transcript fasta file
- Maximum number of paths to show (default: 0)
Output format: Available options samse, sampe, bedpe (default is samse)
Output File Name: Name of the output file (default is output.sam)