- To do a GO enrichment analysis, you need a list of differentially expressed genes, the population (or genome) set to compare them to and the GO annotations associated with the population gene set.
- Note the the GO annotation files (gene association file or gaf) and the GO OBO file (that defines the structure of the Gene Ontologies) are updated on a regular basis.
- You may upload your data (a list of differently expressed genes and the the whole gene population list) as a line separated text file of symbols or accessions.
- Resources: documentation
All files are located in the Community Data directory of the iPlant Discovery Environment at the following path: