The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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  • To do a GO enrichment analysis, you need a list of differentially expressed genes, the population (or genome) set to compare them to and the GO annotations associated with the population gene set.
  • Note the the GO annotation files (gene association file or gaf) and the GO OBO file (that defines the structure of the Gene Ontologies) are updated on a regular basis.
  • You may upload your data  (a list of differently expressed genes and the the whole gene population list) as a line separated text file of symbols or accessions.
  • Resources: documentation

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path: