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Title: Tutorial: Characterizing Differential Expression With RNA-Seq (Without Reference Genome)  
Author: Branden Lau Mar 06, 2015
Last Changed by: Uwe Hilgert Jul 21, 2015
Tiny Link: (useful for email) https://pods.iplantcollaborative.org/wiki/x/RY3e
Export As: Word · PDF  
Incoming Links
1 Learning Materials (1)
    Page: RNA-Seq studies with the almond tree -- an example.
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  • Only bl24 can edit this page. (set by Branden Lau at Mar 06, 2015 12:25)
  • Only hilgert can edit this page. (set by Branden Lau at Mar 06, 2015 12:25)
Outgoing Links
External Links (40)
    samtools.sourceforge.net/samtools.shtml
    ask.iplantcollaborative.org/questions/
    https://pods.iplantcollaborative.org/wiki/display/TUT/F%29+…
    https://pods.iplantcollaborative.org/wiki/display/TUT/D%29+…
    www.gnu.org/software/coreutils/manual/html_node/cat-invocat…
    https://pods.iplantcollaborative.org/wiki/display/TUT/Q%29+…
    user.iplantcollaborative.org/
    bowtie-bio.sourceforge.net/bowtie2/index.shtml
    https://pods.iplantcollaborative.org/wiki/display/TUT/H%29+…
    www.ncbi.nlm.nih.gov/sra/?term=Belgica%20antarctica
    https://pods.iplantcollaborative.org/wiki/display/TUT/B%29+…
    https://pods.iplantcollaborative.org/wiki/display/TUT/M%29+…
    bioconductor.org/packages/release/bioc/vignettes/DESeq/inst…
    kirill-kryukov.com/study/tools/fasta-splitter/
    www.iplantcollaborative.org/learning-center/discovery-envir…
    www.ncbi.nlm.nih.gov/pmc/articles/PMC3528566/
    https://pods.iplantcollaborative.org/wiki/display/TUT/BLAST…
    https://pods.iplantcollaborative.org/wiki/display/TUT/I%29+…
    https://pods.iplantcollaborative.org/wiki/display/TUT/G%29+…
    www.gnu.org/software/coreutils/manual/html_node/cut-invocat…
    https://pods.iplantcollaborative.org/wiki/display/TUT/A%29+…
    https://pods.iplantcollaborative.org/wiki/display/TUT/E%29+…
    https://pods.iplantcollaborative.org/wiki/display/TUT/R%29+…
    https://pods.iplantcollaborative.org/wiki/display/TUT/N%29+…
    https://pods.iplantcollaborative.org/wiki/display/TUT/L%29+…
    https://pods.iplantcollaborative.org/wiki/display/TUT/K%29+…
    https://pods.iplantcollaborative.org/wiki/display/TUT/C%29+…
    transdecoder.github.io/
    https://pods.iplantcollaborative.org/wiki/display/DEapps/Se…
    https://pods.iplantcollaborative.org/wiki/display/TUT/O%29+…
    weizhong-lab.ucsd.edu/cd-hit/
    https://genome.ucsc.edu/goldenPath/help/blatSpec.html#pslRe…
    https://pods.iplantcollaborative.org/wiki/display/TUT/P%29+…
    https://pods.iplantcollaborative.org/wiki/display/DEapps/Jo…
    www.iplantcollaborative.org/learning-center/discovery-envir…
    www.kentinformatics.com/products.html
    https://pods.iplantcollaborative.org/wiki/display/DEapps/Nu…
    https://pods.iplantcollaborative.org/wiki/display/TUT/J%29+…
    pipeline.lbl.gov/code/3rd_party/licenses.win/sed-4.1.5/sed.…
    www.iplantcollaborative.org/learning-center/discovery-envir…
1 Learning Materials (1)     Page: Tutorial: Characterizing Differential Expression With RNA-Seq (Without Reference Genome)