This panel searches content only in this space. To search content in all spaces, use the box at the upper right.


For overview information, see Discovery Environment on the CyVerse website.

DISCOVERY ENVIRONMENT USER MANUAL

 

 

 

 

 

Title: Dockerizing Your Tools for the CyVerse Discovery Environment  
Author: upendra_35 Feb 25, 2016
Last Changed by: Ailene Yee Jun 11, 2019
Tiny Link: (useful for email) https://pods.iplantcollaborative.org/wiki/x/DwRrAQ
Export As: Word · PDF  
Incoming Links
Howto: Docker for the Discovery Environment (1)
    Home page: How-to: Docker for the Discovery Environment
Discovery Environment Manual (4)
    Page: Creating a New App Interface
    Page: Creating, Copying, and Editing DE Apps
    Page: Managing Tools in the DE
    Page: Adding or Requesting a New Tool
Hierarchy
Parent Page
    Page: Creating a New App Interface
Children (1)
    Page: App Publication request workflow
Labels
Outgoing Links
External Links (43)
    merrigrove.blogspot.co.uk/2015/10/visualizing-docker-contai…
    https://www.docker.com/whatisdocker
    https://pods.cyverse.org/wiki/display/HDFDE/Installing+Virt…
    https://github.com/infphilo/hisat2
    https://kitematic.com/
    https://docs.docker.com/userguide/dockervolumes/#mount-a-ho…
    https://pods.iplantcollaborative.org/wiki/display/DEmanual/…
    https://docs.docker.com/engine/installation/
    https://www.docker.com/toolbox
    stackoverflow.com/
    https://www.biostars.org/p/117401/
    https://wiki.cyverse.org/wiki/display/DEmanual/Previewing+t…
    docs.docker.com/engine/reference/commandline/run/
    https://pods.iplantcollaborative.org/wiki/display/DEmanual/…
    docs.docker.com/engine/reference/commandline/run/#set-envir…
    docs.docker.com/engine/reference/commandline/tag/
    https://wiki.cyverse.org/wiki/display/DEmanual/Finding+the+…
    mirrors.cyverse.org/browse/iplant/home/shared/iplantcollabo…
    docs.docker.com/engine/reference/builder/#entrypoint
    https://user.cyverse.org/
    https://github.com/wsargent/docker-cheat-sheet
    bioboxes.org/docs/what-is-a-biobox/
    https://de.iplantcollaborative.org/belphegor
    https://code.google.com/archive/p/paraat/downloads
    https://docs.docker.com/reference/run/#workdir
    https://wiki.cyverse.org/wiki/display/DEmanual/Designing+th…
    mailto:support@cyverse.org
    https://docs.docker.com/engine/reference/builder/#entrypoin…
    https://www.biostars.org/
    https://docs.docker.com/engine/reference/commandline/build/
    https://github.com/pachterlab/kallisto
    https://wiki.cyverse.org/wiki/display/DEmanual/Adding+or+Re…
    https://github.com/upendrak/docker-webinar-1/blob/master/de…
    https://hub.docker.com/explore/
    https://de.cyverse.org/de/
    f1000research.com/channels/containers
    docs.docker.com/engine/userguide/dockerimages/#building-an-…
    https://wiki.cyverse.org/wiki/display/Events/Focus+Forum+We…
    https://wiki.cyverse.org/wiki/display/DEmanual/Saving+the+A…
    https://github.com/iPlantCollaborativeOpenSource/docker-bui…
    https://docs.docker.com/articles/dockerfile_best-practices/
    https://docs.docker.com/engine/reference/builder/
    https://en.wikipedia.org/wiki/Dependency_hell
Howto: Docker for the Discovery Environment (1)     Page: Request Docker image install at iPlant
Discovery Environment Manual (4)     Page: Adding Reference Genome, Sequence, and Annotation Fields to Your App
    Page: Dockerizing Your Tools for the CyVerse Discovery Environment
    Page: Sharing your App or Workflow and Editing the User Manual
    Page: Creating, Copying, and Editing DE Apps