The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Maintenance: Tues, 28 Jan 2020

ACCESS TO OR USAGE OF THE FOLLOWING SERVICES WILL BE UNAVAILABLE OR DISRUPTED:

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The Discovery Environment will be unavailable while patches and updates are applied.
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DEPRECATED APP

This app has been deprecated and is no longer available. If you need to use this app, first search for a similar app (either by name or by tool). If you cannot find a suitable replacement, please contact CyVerse Support at support@cyverse.org.

Items in PURPLE and links are the things you must modify. Change PURPLE items to BLACK when you save your page.

Structure2Tassel 0.0.1 (USER MANUAL UNDER DEVELOPMENT)

Community rating: ?????

Convert structure output for using as covariate input of TASSEL.

Quick Start

Test Data

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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> GWAS -> ParallelStructure

Input File(s)

Use out.txt from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect a text file called out.txt as output is expected.

Tool Source for App

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