The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Samtools 1.7 rmdup + flagstat

This is a workflow that runs Samtools 1.7 rmdup  remove PCR duplicates and uses that output as input for Samtools 1.7 flagstat. Documentation for these apps can be found here:

Samtools 1.7 flagstat

Samtools 1.7 rmdup remove PCR duplicates

Tool Source for App

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