Community rating: ?????
- To use LD (Tassel4), import your data in HAPMAP/PLINK/FLAPJACK/PHYLIP format.
- Resources: http://www.maizegenetics.net/tassel/
Use MAB1_ct5.chr1.hmp.txt from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Expect a text file as output. For the test case, the output file you will find under Community Data -> iplantcollaborative -> example_data -> ld -> output. is named output.txt.