The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

The box below searches only this space.
To search the entire iPlant wiki, enter your query in the box at the upper right.






Skip to end of metadata
Go to start of metadata

MLM (Tassel4)

Community rating: ?????

Quick Start

Test Data


Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> mlm -> input.

Input File(s)

Use mdp_genotype.hmp.txt, mdp_traits.txt, mdp_population_structure.txt and mdp_kinship.txt from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect three text files as output. For the test case, the output files you will find under Community Data -> iplantcollaborative -> example_data -> mlm -> output is named mlm1.txt, mlm2.txt and mlm3.txt.

Tool Source for App

  • No labels