App NameRAxML implements a rapid maximum likelihood-based inference of large phylogenetic trees from amino acid multiple sequence alignments. Quick Start- To use RAxML, upload your data in relaxed PHYLIP format (sequential or interleaved, no name length restrictions).
- Resources: documentation
Test DataAll files are located in the Community Data directory of the iPlant Discovery Environment at the following path:Community Data > iplantcollaborative > example_data > raxml_proteins Input File(s)Use muscle.alignment.interleaved.phylip as test data. Parameters Used in AppWhen the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below. - Model: PROTAT, Substitution Matrix BLOSUM62.
Output File(s)Expect as output: Please note that due to the randomization of the algorithm, your outputs may not be EXACTLY the same as those listed in the example data directory. Tool Sourcehttp://wwwkramer.in.tum.de/exelixis/software.html |