Blat (default)
Blat (default)
Blat (default) is the default form of Blat, the Blast-Like Alignment Tool.
Quick Start
- To use Blat (default), upload your data in fasta format.
- Resources: <http://genome.ucsc.edu/FAQ/FAQblat.html>
Test Data
Input File(s)
Use the E. coli K12 genome from http://www.ncbi.nlm.nih.gov/nuccore/NC_010473.1?report=fasta&log$=seqview&format=text
and the homoserine kinase gene sequence from http://www.ncbi.nlm.nih.gov/nuccore/NC_010473.1?report=fasta&log$=seqview&format=text&from=2801&to=3733 as test data. Use Import from URL to get the data into your Discovery Environment account.
Parameters Used in App
There are no parameter settings for Blat (default). All settings are preset as default.
Output File(s)
Expect a tab delimited txt file as output, named output.psl. It is in psl format, which can be converted to SAM format.