2018 07 14 MaizeCODE annotation Workshop at Plant Biology 2018
| Date and Time | Saturday, July 14th (9:00am-12:00pm) |
|---|---|
Organizers: | Cristina Fernandez-Marco (MaizeCODE) Liya Wang (Cyverse and MaizeCODE) |
Local Point of Contact: | Cristina Fernandez-Marco |
Location | ASPB - Montreal |
Workshop Prep
1. Laptop
Please bring your own Wi-Fi enabled laptop to the workshop. Make sure your laptop has the following:
- Internet Browser: Please have an up-to-date web browser (We strongly recommend Firefox, Safari, or Chrome and others have significant issues.)
2. CyVerse Account (OPTIONAL)
- Get your free account at http://user.cyverse.org/. Please register with an institutional email account.
2. Atmosphere Access (OPTIONAL)
- Go to http://user.cyverse.org/. In the Services Menu under ‘MY SERVICES’ you should see Atmosphere listed as an option you can launch. If not, look under the Available menu, and click the ‘REQUEST ACCESS’ link. You will receive an email requesting additional information. To qualify for an Atmosphere account, your CyVerse account must be associated with an institutional email address (e.g. .edu/.org/.gov).
Agenda
Time | Topic/Activity | Presenter | Guides | Notes/Links |
|---|---|---|---|---|
| 9:00 - 9:15 AM | Welcome and introductions | All | ||
9:15 - 9:45 AM | Introduction to MAKER annotation pipeline and CyVerse | Liya | ||
9:45 - 10:00 AM | Introduction to MaizeCODE | Cris | ||
| 10:00 - 10:30 AM | Introduction to Apollo | Cris | ||
10:30 - 10:35 AM | Break |
| ||
| 10:35 - 11:35 AM | Gene families / Independent projects / Questions | All | http://data.maizecode.org/apollo/annotator/ | |
11:35 - 11:55 AM | Results / Challenges | All | ||
11:55 - 12:00 PM | Wrap up / Involvement / Feedback | All | ||
Speakers and Affiliations
Cold Spring Harbor Laboratory
MaizeCode
Cold Spring Harbor Laboratory
CyVerse, MaizeCODE