References and Pointers

Owned by rogowitz
Last updated: Apr 21, 2010Version comment

Access to Plant MetGenMAP
The link to the login:http://bioinfo.bti.cornell.edu/cgi-bin/MetGenMAP/login.cgi

                           User: vtppws
                           Password: vtppwstest

Plant Metabolic Network

main web site:  http://www.plantcyc.org:1555/expression.html

examples of network viewer and animation: http://www.plantcyc.org:1555/ov-expr.shtml     

TAIR

http://www.arabidopsis.org/tools/bulk/index.jsp

  • Gene Descriptions   Download gene descriptions using locus identifiers (AGI codes) or gene names.
  • Gene Ontology (GO) Annotations     Search and download GO annotations using locus identifiers. Functionally classify Arabidopsis genes and view the results as tables or pie charts.
  • Plant Ontology (PO) Annotations  Search and download PO annotations using locus identifiers.
  • Sequences  Download nucleotide and protein sequences using locus identifiers.Send FASTA formatted sequences to ClustalW multiple sequence alignment program at the European Bioinformatics Institute.
  • Proteins Search proteins according to predicted protein properties. Now includes SCOP's structural class prediction.
  • Locus History Find out how a locus has been modified during different releases of the genome by entering a locus name.
  • Microarray Elements Search array elements on the Affymetrix 8K, 25K, and all the AFGC arrays.