Agenda

Update on TR service

Notes

Attendees: Nicole, Todd, Naim, Eric, Jamie

TR search for Gene Family – User has 3 entry points for search
Blast interface (no service yet)
Gene ID interface – limited to sequence IDs from 1KP project data used for this release
User enters Gene ID and is returned a gene family – note: if there are GO terms associated with any genes in this family, they will display as well.
User selects gene family – gene tree representation. Putting in ability to download image
User views species tree – species tree is the same for any gene family
User selects Fat Tree – image can be expanded
Soon to be added:
- Ability to save images in My Data in DE
- Ability to download images to local environment
- Better sizing of images for Fat Tree representation
- Display of GO terms for gene family
- BLASTp Interface working
Details Tab and contents
See slides 12 - 23 in presentation attachment

Species Tree - the branches are not aligned. The team will look at rendering a different image.
Gene Tree – is there a way to build a legend to show the meaning of the colors?
Todd suggested showing the Fat Tree first then breaking down into smaller bits. It was also suggested to change the Fat Tree name to a version of Reconciled/Reconciliation
Add the option of rendering in black and white or color.
TV group will discuss with Sheldon what the priorities are for the next step.
Goal is limited release by early November 2010.