- Independent contrasts:
Software? PDAP module in mesquite
CONTRAST in PHYLIP
APE package in R?
Phylocom (parts of the program are known to work for at least 10K taxa)
- Continuous ancestral character state reconstruction (with confidence measures)
Identify candidate software:
ANCML
Mesquite
APE (R package)
Phylocom
- Discrete ancestral character state reconstruction (with confidence measures)
Identify candidate software:
Mesquite
APE (R package)
BayesTraits
- Various stretching processes (Blomberg K, various Pagel transforms, etc.)
Identify candidate software:
Geiger (R package)
BayesTraits
Phylocom
- Additional methods (discussion needed when nearing that point)
{"serverDuration": 14, "requestCorrelationId": "09d0e86494964b4ebd80d3aae67e0cef"}