Genome Browser in an iframe
Instant genome Browser:
This example uses an iframe to load CoGe's genome browser. Nothing is being hosted on the server and uses one line of HTML:
< iframe src = "https://genomevolution.org/coge/GenomeView.pl?gid=16911&embed=1" style =" width : 100% ; height : 100% " ></ iframe >
Details:
More information on how to embed CoGe's genome browser can be found on CoGePedia: https://genomevolution.org/wiki/index.php/Embedding_CoGe_JBrowse_in_your_website
Download Data:
- To download this genome using CoGe's API: https://genomevolution.org//coge/api/v1/genomes/16911/sequence
- To download a portion of a genome: https://genomevolution.org/coge/coge/api/v1/genomes/16911/sequence/<chr>?start=<x>&stop=<y>
- You can embed or link to any genome in CoGe using the genome_id (in this case, 16911 which is for Arabidopsis).
- Export GFF requires more advanced use of CoGe's API:
PUT [base_url/jobs] { "type": “export_gff”, "parameters": { “dest_type”: “irods”, “gid”: “16911”, “overwrite”: “1” } }
- Click for more information on CoGe's API