iPlant Webinar- Transcript Assembly Approaches
Webinar: Transcript Assembly Approaches by Roger Barthelson (April 17, 2015)
Slides
Webinar Recording
Tutorials:
- Transcriptome Assembly (de novo): http://www.iplantcollaborative.org/learning-center/discovery-environment/de-005-transcriptome-assembly-de-novo
- Characterizing Differential Expression with RNA-Seq (without reference genome): https://pods.iplantcollaborative.org/wiki/display/TUT/Characterizing+Differential+Expression+With+RNA-Seq+%28Without+Reference+Genome%29
- Blast a Transcriptome: https://pods.iplantcollaborative.org/wiki/display/TUT/BLAST+a+Transcriptome
Software information:
- Soapdenovo-Trans: http://soap.genomics.org.cn/SOAPdenovo-Trans.html
- Trinity: http://trinityrnaseq.github.io/
- Oases: https://www.ebi.ac.uk/~zerbino/oases/
- Bayesembler: http://bioinformatics-centre.github.io/bayesembler/